Molecular Characterization of a Novel Avian Influenza A (H2N9) Strain Isolated from Wild Duck in Korea in 2018
Identifieur interne : 000068 ( Main/Exploration ); précédent : 000067; suivant : 000069Molecular Characterization of a Novel Avian Influenza A (H2N9) Strain Isolated from Wild Duck in Korea in 2018
Auteurs : Seon-Ju Yeo ; Duc-Duong Than ; Hong-Seog Park ; Haan Woo Sung [Corée du Sud] ; Hyun ParkSource :
- Viruses [ 1999-4915 ] ; 2019.
Abstract
A novel avian influenza virus (A/wild duck/Korea/K102/2018) (H2N9) was isolated from wild birds in South Korea in 2018, and phylogenetic and molecular analyses were conducted on complete gene sequences obtained by next-generation sequencing. Phylogenetic analysis indicated that the hemagglutinin (HA) and neuraminidase (NA) genes of the A/wild duck/Korea/K102/2018 (H2N9) virus belonged to the Eurasian countries, whereas other internal genes (polymerase basic protein 1 (PB1), PB2, nucleoprotein (NP), polymerase acidic protein (PA), matrix protein (M), and non-structural protein (NS)) belonged to the East Asian countries. A monobasic amino acid (PQIEPR/GLF) at the HA cleavage site, E627 in the PB2 gene, and no deletion of the stalk region in the NA gene indicated that the A/wild duck/Korea/K102/2018 (H2N9) isolate was a typical low pathogenicity avian influenza (LPAI). Nucleotide sequence similarity analysis of HA revealed that the highest homology (98.34%) is to that of A/duck/Mongolia/482/2015 (H2N3), and amino acid sequence of NA was closely related to that of A/duck/Bangladesh/8987/2010 (H10N9) (96.45%). In contrast, internal genes showed homology higher than 98% compared to those of other isolates derived from duck and wild birds of China or Japan in 2016–2018. The newly isolated A/wild duck/Korea/K102/2018 (H2N9) strain is the first reported avian influenza virus in Korea, and may have evolved from multiple genotypes in wild birds and ducks in Mongolia, China, and Japan.
Url:
DOI: 10.3390/v11111046
PubMed: 31717636
PubMed Central: 6893532
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Molecular Characterization of a Novel Avian Influenza A (H2N9) Strain Isolated from Wild Duck in Korea in 2018</title><author><name sortKey="Yeo, Seon Ju" sort="Yeo, Seon Ju" uniqKey="Yeo S" first="Seon-Ju" last="Yeo">Seon-Ju Yeo</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author><author><name sortKey="Than, Duc Duong" sort="Than, Duc Duong" uniqKey="Than D" first="Duc-Duong" last="Than">Duc-Duong Than</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author><author><name sortKey="Park, Hong Seog" sort="Park, Hong Seog" uniqKey="Park H" first="Hong-Seog" last="Park">Hong-Seog Park</name><affiliation><nlm:aff id="af2-viruses-11-01046">GnCBio Inc, 4F, Yegan Plaza, 36, Banseok-ro, Yuseong-gu, Daejeon 34069, Korea;<email>5022daniel@naver.com</email></nlm:aff></affiliation></author><author><name sortKey="Sung, Haan Woo" sort="Sung, Haan Woo" uniqKey="Sung H" first="Haan Woo" last="Sung">Haan Woo Sung</name><affiliation wicri:level="1"><nlm:aff id="af3-viruses-11-01046">College of Veterinary Medicine, Kangwon National University, Chuncheon 24341, Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>College of Veterinary Medicine, Kangwon National University, Chuncheon 24341</wicri:regionArea><wicri:noRegion>Chuncheon 24341</wicri:noRegion></affiliation></author><author><name sortKey="Park, Hyun" sort="Park, Hyun" uniqKey="Park H" first="Hyun" last="Park">Hyun Park</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">31717636</idno><idno type="pmc">6893532</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6893532</idno><idno type="RBID">PMC:6893532</idno><idno type="doi">10.3390/v11111046</idno><date when="2019">2019</date><idno type="wicri:Area/Pmc/Corpus">000C51</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000C51</idno><idno type="wicri:Area/Pmc/Curation">000C51</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000C51</idno><idno type="wicri:Area/Pmc/Checkpoint">000049</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000049</idno><idno type="wicri:Area/Ncbi/Merge">001025</idno><idno type="wicri:Area/Ncbi/Curation">001025</idno><idno type="wicri:Area/Ncbi/Checkpoint">001025</idno><idno type="wicri:Area/Main/Merge">000068</idno><idno type="wicri:Area/Main/Curation">000068</idno><idno type="wicri:Area/Main/Exploration">000068</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Molecular Characterization of a Novel Avian Influenza A (H2N9) Strain Isolated from Wild Duck in Korea in 2018</title><author><name sortKey="Yeo, Seon Ju" sort="Yeo, Seon Ju" uniqKey="Yeo S" first="Seon-Ju" last="Yeo">Seon-Ju Yeo</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author><author><name sortKey="Than, Duc Duong" sort="Than, Duc Duong" uniqKey="Than D" first="Duc-Duong" last="Than">Duc-Duong Than</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author><author><name sortKey="Park, Hong Seog" sort="Park, Hong Seog" uniqKey="Park H" first="Hong-Seog" last="Park">Hong-Seog Park</name><affiliation><nlm:aff id="af2-viruses-11-01046">GnCBio Inc, 4F, Yegan Plaza, 36, Banseok-ro, Yuseong-gu, Daejeon 34069, Korea;<email>5022daniel@naver.com</email></nlm:aff></affiliation></author><author><name sortKey="Sung, Haan Woo" sort="Sung, Haan Woo" uniqKey="Sung H" first="Haan Woo" last="Sung">Haan Woo Sung</name><affiliation wicri:level="1"><nlm:aff id="af3-viruses-11-01046">College of Veterinary Medicine, Kangwon National University, Chuncheon 24341, Korea</nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>College of Veterinary Medicine, Kangwon National University, Chuncheon 24341</wicri:regionArea><wicri:noRegion>Chuncheon 24341</wicri:noRegion></affiliation></author><author><name sortKey="Park, Hyun" sort="Park, Hyun" uniqKey="Park H" first="Hyun" last="Park">Hyun Park</name><affiliation><nlm:aff id="af1-viruses-11-01046">Zoonosis Research Center, Department of Infection Biology, School of Medicine, Wonkwang University, Iksan 54538, Korea;<email>yeosj@wku.ac.kr</email> (S.-J.Y.);<email>ducduong27189@gmail.com</email> (D.-D.T.)</nlm:aff></affiliation></author></analytic><series><title level="j">Viruses</title><idno type="eISSN">1999-4915</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A novel avian influenza virus (A/wild duck/Korea/K102/2018) (H2N9) was isolated from wild birds in South Korea in 2018, and phylogenetic and molecular analyses were conducted on complete gene sequences obtained by next-generation sequencing. Phylogenetic analysis indicated that the hemagglutinin (HA) and neuraminidase (NA) genes of the A/wild duck/Korea/K102/2018 (H2N9) virus belonged to the Eurasian countries, whereas other internal genes (polymerase basic protein 1 (PB1), PB2, nucleoprotein (NP), polymerase acidic protein (PA), matrix protein (M), and non-structural protein (NS)) belonged to the East Asian countries. A monobasic amino acid (PQIEPR/GLF) at the HA cleavage site, E627 in the PB2 gene, and no deletion of the stalk region in the NA gene indicated that the A/wild duck/Korea/K102/2018 (H2N9) isolate was a typical low pathogenicity avian influenza (LPAI). Nucleotide sequence similarity analysis of HA revealed that the highest homology (98.34%) is to that of A/duck/Mongolia/482/2015 (H2N3), and amino acid sequence of NA was closely related to that of A/duck/Bangladesh/8987/2010 (H10N9) (96.45%). In contrast, internal genes showed homology higher than 98% compared to those of other isolates derived from duck and wild birds of China or Japan in 2016–2018. The newly isolated A/wild duck/Korea/K102/2018 (H2N9) strain is the first reported avian influenza virus in Korea, and may have evolved from multiple genotypes in wild birds and ducks in Mongolia, China, and Japan.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alexander, D J" uniqKey="Alexander D">D.J. Alexander</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Senne, D" uniqKey="Senne D">D. Senne</name></author><author><name sortKey="Panigrahy, B" uniqKey="Panigrahy B">B. Panigrahy</name></author><author><name sortKey="Kawaoka, Y" uniqKey="Kawaoka Y">Y. Kawaoka</name></author><author><name sortKey="Pearson, J" uniqKey="Pearson J">J. Pearson</name></author><author><name sortKey="Suss, J" uniqKey="Suss J">J. 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Ip</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Corée du Sud</li></country></list><tree><noCountry><name sortKey="Park, Hong Seog" sort="Park, Hong Seog" uniqKey="Park H" first="Hong-Seog" last="Park">Hong-Seog Park</name><name sortKey="Park, Hyun" sort="Park, Hyun" uniqKey="Park H" first="Hyun" last="Park">Hyun Park</name><name sortKey="Than, Duc Duong" sort="Than, Duc Duong" uniqKey="Than D" first="Duc-Duong" last="Than">Duc-Duong Than</name><name sortKey="Yeo, Seon Ju" sort="Yeo, Seon Ju" uniqKey="Yeo S" first="Seon-Ju" last="Yeo">Seon-Ju Yeo</name></noCountry><country name="Corée du Sud"><noRegion><name sortKey="Sung, Haan Woo" sort="Sung, Haan Woo" uniqKey="Sung H" first="Haan Woo" last="Sung">Haan Woo Sung</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:31717636" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a H2N2V1
| This area was generated with Dilib version V0.6.33. |  |